I spent a bunch of time as you are now researching the topic to death. I went with 3.73s as I don't plan on ever going FI with this car. I plan to do headwork and stay NA down the road but then get a GEN V as well for my hp fix. The 3.55s most people go with are the "sweet spot" so to speak where it gives a decent increase in accel but also doesn't cause anyone to complain about highway rpm, too short of gear, or loss of traction. 3.73 is for the all out performance if you are staying NA and thats the route I chose to go. I don't plan on driving this car across the country to worry about the rpm sitting high on a big road trip (as this is a factor with some).
I haven't thrown my 3.73 diff in yet as it just arrived last week but I haven't thought twice about my decision after looking at all the factors. As a comparison the GEN V comes with 3.55 stock yet has 200 more hp than the GEN II. Transmission ratios aside that is a hint at what you would chose.
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